HsaEX6008685 @ hg19
Exon Skipping
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor (hepapoietin A; scatter factor) [Source:HGNC Symbol;Acc:4893]
Coordinates
chr7:81339463-81346681:-
Coord C1 exon
chr7:81346548-81346681
Coord A exon
chr7:81340797-81340835
Coord C2 exon
chr7:81339463-81339559
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTATACATTTATTTTTACAGGTG
3' ss Score
9.77
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
TCATATCTTCTGGGAACCAGATGCAAGTAAGCTGAATGAGAATTACTGCCGAAATCCAGATGATGATGCTCATGGACCCTGGTGCTACACGGGAAATCCACTCATTCCTTGGGATTATTGCCCTATTTCTCGTT
Seq A exon
GTGAAGGTGATACCACACCTACAATAGTCAATTTAGACC
Seq C2 exon
ATCCCGTAATATCTTGTGCCAAAACGAAACAATTGCGAGTTGTAAATGGGATTCCAACACGAACAAACATAGGATGGATGGTTAGTTTGAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-'20-25,'20-24,21-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=FE(57.0=100)
A:
PF0005113=Kringle=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PU(8.6=57.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCTACACGGGAAATCC
R:
TGTTTGTTCGTGTTGGAATCCCA
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)