RnoEX6012416 @ rn6
Exon Skipping
Gene
ENSRNOG00000007027 | Hgf
Description
hepatocyte growth factor [Source:RGD Symbol;Acc:2794]
Coordinates
chr4:15443414-15451518:-
Coord C1 exon
chr4:15451385-15451518
Coord A exon
chr4:15445038-15445076
Coord C2 exon
chr4:15443414-15443510
Length
39 bp
Sequences
Splice sites
3' ss Seq
CATAATATTTGTTTCTATAGGTG
3' ss Score
9.52
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
TCATATCTTCTGGGAGCCAGACGCTAGCAAGTTGACTAAGAATTACTGCCGGAACCCCGATGACGACGCCCATGGACCTTGGTGCTACACAGGGAATCCTCTCGTTCCTTGGGATTATTGCCCTATTTCCCGTT
Seq A exon
GTGAAGGAGATACTACACCTACAATTGTCAATTTGGACC
Seq C2 exon
ATCCTGTAATATCCTGTGCCAAAACAAAACAACTGCGAGTTGTAAATGGCATTCCAACACAAACAACAGTAGGGTGGATGGTTAGTTTGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007027-'11-17,'11-15,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=FE(57.0=100)
A:
PF0005113=Kringle=PD(0.1=0.0)
C2:
PF0008921=Trypsin=PU(8.5=57.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGACCTTGGTGCTACAC
R:
GGAATGCCATTTACAACTCGCA
Band lengths:
120-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]