BtaEX6026940 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44183843-44185852:-
Coord C1 exon
chr4:44185779-44185852
Coord A exon
chr4:44184669-44184896
Coord C2 exon
chr4:44183843-44184035
Length
228 bp
Sequences
Splice sites
3' ss Seq
GTGCGTATGTATCCCCACAGAGA
3' ss Score
8.19
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GATGAAGTGGTCCACCATCAATCCATCCCTGTACAAATTGGAAAAGAGATAGAAAAAACAACACGCAAAAAAGT
Seq A exon
AGAAATGGAAAAGAAAAAACTTGTCTTGGAATATGAACTCAAAGAGCTAAATGATTCCCTAAAGAAAGTCGAAACCAAAATTAATGCTGTAATGGAAGAGAAGGAGGATGTAATAAAGGAAGTTGAAGGCAAACGGGCCTTACTCGAAATTAAAGAGCGAGAATATAACCAATTGGTCAAGCTATTAGAATTAACTAGAGAGAATGAAGCAAGTTCACTAACTGAAAG
Seq C2 exon
GAACAGAGGGATCTTGGATCTCAATTTACGAAACTGTCTTATTGACAAGCATAACTACCACGATGAACTTTCTCGTAAGCAGAGAGAGAAAGAACGAGATTTTCGAAATTTAAAAAAAATGGAGCTACTCTTGAAAGTGTCCTGGGATGCACTCAATCAAACTCAAGCACTGCATCAGAGGCTTCTGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'6-7,'6-6,7-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCACCATCAATCCATCC
R:
GAAGCCTCTGATGCAGTGCTT
Band lengths:
252-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]