RnoEX0017646 @ rn6
Exon Skipping
Gene
ENSRNOG00000012932 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr4:10371369-10374183:+
Coord C1 exon
chr4:10371369-10371442
Coord A exon
chr4:10372775-10373002
Coord C2 exon
chr4:10373997-10374183
Length
228 bp
Sequences
Splice sites
3' ss Seq
TCCGTGTGTGTTCCCTACAGAGA
3' ss Score
10.43
5' ss Seq
AAGGTTACT
5' ss Score
1.25
Exon sequences
Seq C1 exon
GATGACGTGGTCCATCATCAAAGTGTTCCTGTACAAATTACAAAGGAGATAGAAAAACTAACACGCAGAAAAAT
Seq A exon
AGAAACAGAGAAGAAAAATGTTGTCTTGGAATTTGAGTTGAAAGAGCTCAGTGACTCTTTAAAGAAGCTTGAAAACAAAGTCAGTGCTCTTGCAGAAGAGAGGGATGACACAATAAAGGAAGTTGAGGGCAAGCGAACCTTACTAGAAGTCAAAGAACGAGAATATGGCCAACTGCTTAAACTATTGGAATTAACCAAAGAGAATGAAGCCTCCTCGCTAGCTGAAAG
Seq C2 exon
AGGGATCTTGGATATCAATCTACGAAACTGCCTCATGGACAAGCAGAATTACCATGATGAACTTTCTCGTAAGCAACGAGAGAAAGAACGAGATTTTCGGAATCTGAAGAAGACAGAGCTGCTCCTGAAAGTGTCCTTGGATGCGCTCTCTCAGGCTCAAGCCTTGAATCAGAGGCTTCTACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012932_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGTGGTCCATCATCAAAGT
R:
CTCTAGTAGAAGCCTCTGATTCAAGG
Band lengths:
260-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]