MmuEX6016094 @ mm10
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:21316786-21319602:-
Coord C1 exon
chr5:21319529-21319602
Coord A exon
chr5:21317986-21318213
Coord C2 exon
chr5:21316786-21316972
Length
228 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTACTCCCTACAGAGA
3' ss Score
8.96
5' ss Seq
AAGGTTGCT
5' ss Score
-0.35
Exon sequences
Seq C1 exon
GATGACGTGGTCCACCATCAAAGTGTTCCTGTACAAATTACAAAGGAGATAGAAAAAATGACACGCAAAAAAGT
Seq A exon
AGAAACAGAGAAGAAAAATATTGTCTTGGAATCTGAGTTGAAAGAGCTAAGTGACTCTTTAAAGAAGCTTGAAAACAAAGTCAACACTCTTGCGGAAGAAAGGGATGACATAATGAAGGAAGTTGAGGGCAAGCGAACCTTACTAGAAGTCAAAGAACGAGAGTATGGCCAACTGCTTAAACTATTGGAACTAACCAAAGAGAACGAAGCCTCCTCGCTAGCTGAAAG
Seq C2 exon
AGGGATCTTGGATATCAATCTACGGAACTGTCTCATCGACAAGCAGAACTACCATGATGAACTTTCTCGTAAGCAAAGAGAGAAAGAACGAGATTTTCGGAATCTGAAGAAGACAGAGCTGCTCCTGAAAGTGTCTTTGGATGCGCTCACTCAGGCACAAGCCATGAATCAAAGGCTTCTACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'18-21,'18-20,21-21
Average complexity
S
Mappability confidence:
78%=60=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCACCATCAAAGTGTTCC
R:
CTAGTAGAAGCCTTTGATTCATGGCT
Band lengths:
252-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types