GgaEX6000482 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13709635-13712480:-
Coord C1 exon
chr1:13712407-13712480
Coord A exon
chr1:13710735-13710962
Coord C2 exon
chr1:13709635-13709821
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTGTTAACACGTATCCACAGCGA
3' ss Score
6.15
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATGAATTAGTTAAGATCCTTGGTGTTCCAGTGCAACTTAAAAAAGAAGCTGAGAAGATAAATCAGAAAAAAAT
Seq A exon
CGATGCAGAGAAGAAGAATGAAGACCTTAATAACCAAATGCAGGAGTTAAACAGTACCCTGAACGACATCGACAAAGGGACAGAAAAGATTTTGCAAGAAAGAGAAGATGTAATGAAGGAACTGGATGGAAAACGAGCTTTGCTGGAAAGCAAAGAACAAGAATGTGCTGCTTTGGCAAGACTGCTAGAAATTGGCAGAGAAAAGCAACTGGCGATCCTGGTAGAGAG
Seq C2 exon
AGACTCTCTGAACCAAAAGTTAAATGAACGAATCTTTGAGAAAAAACAACAGCAGGAAACTCTCATTTACATGCAAGGAGAGAAAGATAAAGAACTGAGGAATCTGAAAAAGATGGAGCTACAGATGAAAATGATTCATGAGTCCTTGCAACAAGAGAAGTCACAGCACAAAACACTCAAATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.390 C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAATTAGTTAAGATCCTTGGTGT
R:
TCCAATTTGAGTGTTTTGTGCTGT
Band lengths:
260-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]