MmuEX6016094 @ mm9
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:20822604-20825420:-
Coord C1 exon
chr5:20825347-20825420
Coord A exon
chr5:20823804-20824031
Coord C2 exon
chr5:20822604-20822790
Length
228 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTACTCCCTACAGAGA
3' ss Score
8.96
5' ss Seq
AAGGTTGCT
5' ss Score
-0.35
Exon sequences
Seq C1 exon
GATGACGTGGTCCACCATCAAAGTGTTCCTGTACAAATTACAAAGGAGATAGAAAAAATGACACGCAAAAAAGT
Seq A exon
AGAAACAGAGAAGAAAAATATTGTCTTGGAATCTGAGTTGAAAGAGCTAAGTGACTCTTTAAAGAAGCTTGAAAACAAAGTCAACACTCTTGCGGAAGAAAGGGATGACATAATGAAGGAAGTTGAGGGCAAGCGAACCTTACTAGAAGTCAAAGAACGAGAGTATGGCCAACTGCTTAAACTATTGGAACTAACCAAAGAGAACGAAGCCTCCTCGCTAGCTGAAAG
Seq C2 exon
AGGGATCTTGGATATCAATCTACGGAACTGTCTCATCGACAAGCAGAACTACCATGATGAACTTTCTCGTAAGCAAAGAGAGAAAGAACGAGATTTTCGGAATCTGAAGAAGACAGAGCTGCTCCTGAAAGTGTCTTTGGATGCGCTCACTCAGGCACAAGCCATGAATCAAAGGCTTCTACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'9-11,'9-10,12-11=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.127
Domain overlap (PFAM):
C1:
PF102944=Methyltransf_16=FE(20.7=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCACCATCAAAGTGTTCC
R:
CTAGTAGAAGCCTTTGATTCATGGCT
Band lengths:
252-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: