HsaEX6008590 @ hg38
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77256333-77274652:+
Coord C1 exon
chr7:77256333-77256509
Coord A exon
chr7:77260009-77260236
Coord C2 exon
chr7:77274482-77274652
Length
228 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTATCCCCTACAGAGA
3' ss Score
9.25
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAAATGGAGAAGAAGATGAAAATATTGAGAGAAAGCACTGAAGAATTACGTAAAGAAATAATGCAGAAGAAATTAGAAATTAAAAATTTACGAGAAGATTTGGCATCTAAACAAAAGCAATTATTAAAAGAGCAGAAGGAACTAGAAGAATTGTTGGGACATCAGGTCGTCCTAAAG
Seq A exon
AGAAATGGAAAAGAAAAAAATTGTCTTGGAACAAGAAGTCAAAACGCTAAATGACTCCCTAAAGAAAGTTGAAAACAAGGTTAGTGCTATAGTGGATGAGAAGGAAAATGTAATAAAGGAAGTTGAAGGCAAACGAGCCTTACTTGAAATCAAAGAACGAGAACATAACCAATTGGTCAAGCTATTGGAATTAGCCAGAGAGAATGAAGCAACTTCATTAACTGAAAG
Seq C2 exon
AAAATTATATCAGAAATGGAGTCTAAGTTAGTAGAACAACAACTTGCAGAAGAAAACAAGCTTTTAAAGGAGCAAGAAAACATGAAAGAGCTAGTAGTCAACCTTCTCCGCATGACTCAAATCAAAATTGATGAAAAGGAACAAAAGTCCAAGGATTTCCTGAAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205_MULTIEX3-3/6=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000285871fB11487
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGAAAGCACTGAAGAATTACGT
R:
TCCTTGGACTTTTGTTCCTTTTCA
Band lengths:
307-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains