BtaEX6027731 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039231 | MTURN
Description
Bos taurus chromosome 4 open reading frame, human C7orf41 (C4H7orf41), mRNA. [Source:RefSeq mRNA;Acc:NM_001101246]
Coordinates
chr4:66610955-66643765:-
Coord C1 exon
chr4:66643431-66643765
Coord A exon
chr4:66630960-66631082
Coord C2 exon
chr4:66610955-66616265
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTTACCGGTGGGCACGCAGCAC
3' ss Score
2.95
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
GGGACCGGAGGGAGCCCGAGCCGCCCGGCCCCGCCGCCTGCCCGAGAGCCACAGAGCCGCGTGCTGCCCGTCCGGGAGGAGGGCGCCGGAGGAGAGGAGGGCGGGCGGCGGAGGGAGCTGGAGGCGGGCGGCGCGCGAAGAGGCTGAGGGAGCGGCGGGCGCGGCGGGCCAGGATGGATTTCCAGCAGCTGGCTGACGTTGCGGAGAAATGGTGCTCCAACACGCCCTTCGAGCTCATCGCCACCGAGGAGACCGAGCGCAGGATGGATTTCTACGCCGATCCCGGCGTCTCCTTCTACGTGTTGTGTCCGGACAACGGCTGCGGGGACAATTTT
Seq A exon
CACGTGTGGAGTGAGAGTGAAGACTGCCTGCCTTTCTTGCAGCTAGCACAGGATTACATCTCCTCCTGCGGCAAGAAGACGCTCCATGAAGTCTTGGAAAAAGTCTTCAAGTCTTTCAGACCT
Seq C2 exon
TTACTGGGGCTTCCGGATGCAGATGACGACGCTTTTGAGGAGTACAGTGCAGACGTGGAAGAGGAGGAGCCAGAAGCGGACCACCCCCAGATGGGGGTCAGTCAGCAGTAGACTTCCGAGGGCTCCCGCCTGAGAAGGAGAGTGAGCCCCGTGTACCTAGGGTGGGGTCGTGAGCTCCTGGGTTAGCATTTTGCATTAGCACTTCGAAACAGGACGTCTGACTCCCAGCATCCAAATTAATATGAAATACCTTTTTAATGACCACACAATATCTGGGATGAGCTTTGCTCAGAAGTGACCTGAATTTTACTCCCGTTTCAGTGGGTCTCTATGGAGTTGTCTCGGTAGCCTTTGCCAGTTTGAATTTAGAGTCCATTCTGTGGCTGACTGTTCTCTCTTGAGTTTATGTTGGAGAACTAACATTTGCTGACTCGAATGTCGAGAACTCTGAATGTATTAAGGATATGCGTTGAGTCATCACAGGTGACATTACTGAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039231-'0-5,'0-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.694
Domain overlap (PFAM):
C1:
PF151671=DUF4581=PU(39.1=92.6)
A:
PF151671=DUF4581=FE(31.2=100)
C2:
PF151671=DUF4581=PD(27.3=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGTTGCGGAGAAATGGT
R:
AGTCTACTGCTGACTGACCCC
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]