HsaEX0011438 @ hg19
Exon Skipping
Gene
ENSG00000180354 | C7orf41
Description
chromosome 7 open reading frame 41 [Source:HGNC Symbol;Acc:25457]
Coordinates
chr7:30174426-30202378:+
Coord C1 exon
chr7:30174426-30174914
Coord A exon
chr7:30185793-30185915
Coord C2 exon
chr7:30197054-30202378
Length
123 bp
Sequences
Splice sites
3' ss Seq
CGTCGCCCGTGGGCACGCAGCAC
3' ss Score
4.12
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
GGGAGCGCCCAGGAAAATCCGGGCGCCCGCGGGGGTGCCGGCCGCTCCTCCCGCCGCCCCGCGTCCCGGCCCGGCCGCGCCAACCCCCACGGCGGCCCGCAAGGGGGCGGGGGGAGGCGGGGCGGAGGAGGAGCCGCGGGCGCGGCGCCGCGCTGTCCCCGGCCGCCGCCCGCCCCACTCCGCACCGCATGTAAACAGTCCCAGCCGGCCCAGCCCGGCCCCGGAGGAGCCCGCGCAGGCCGAGCCGAGCGCCGCGCTGCCCGCCCGGGAGGAGGGCGCCTAGGAGCGGGAGGGCGGGCGGCGGCGGGAGGCGGGCGCGGGGCCGCGATGGATTTCCAGCAGCTGGCCGACGTTGCGGAGAAATGGTGCTCCAACACGCCCTTCGAGCTCATCGCCACCGAGGAGACCGAACGCAGGATGGATTTCTACGCCGACCCCGGCGTCTCCTTCTATGTGCTGTGTCCGGACAACGGCTGCGGCGACAATTTT
Seq A exon
CACGTGTGGAGTGAGAGCGAGGACTGCCTGCCTTTCTTGCAGCTAGCACAGGATTACATCTCCTCCTGCGGCAAGAAGACGCTCCACGAAGTCCTGGAAAAAGTCTTCAAGTCTTTCAGACCT
Seq C2 exon
TTACTGGGGCTTCCGGATGCAGATGACGATGCGTTTGAAGAGTACAGTGCTGACGTGGAAGAAGAGGAGCCAGAGGCGGACCACCCCCAGATGGGGGTCAGCCAGCAGTAAATCTGGGGGCTCCCCTGAGAAGGAGAGTGAGCCCCACAGTAACCTAGGTGGGGTCACTGCCCCTCCTGGGTTAGCATTTTGCATTAGCACTTCGAAATAGGACATCTGGCTCCCAGCATCCAAATTAAAATGAAATACCTTTTTAACGACCACAAAATATCTGTGATGAGCTTTGCTCAGAAGTGACCTGAATTTCACTCCCGCTTCAGTGGGGTTTCTATGGAGTTGTCTTGGTAGCCTTTGCCATTTTGAATTTAGAGTCCATTTTGTGGCTGACTATTCTCTTAAGTTTATGTTGGAGAATTAACATTCGCTGACTCGAATGTAGAGAACTCTGAATGTATTAAGGATAGGTTTTGAGTCCTCACAGGTGACCTTACTGAGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180354_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.698
Domain overlap (PFAM):
C1:
PF151671=DUF4581=PU(39.1=92.6)
A:
PF151671=DUF4581=FE(42.6=100)
C2:
PF151671=DUF4581=PD(0.1=0.0),PF151671=DUF4581=PD(94.6=94.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAACGCAGGATGGATTTC
R:
ACCTAGGTTACTGTGGGGCTC
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)