DreEX6071431 @ danRer10
Exon Skipping
Gene
ENSDARG00000074505 | mturn
Description
maturin, neural progenitor differentiation regulator homolog (Xenopus) [Source:ZFIN;Acc:ZDB-GENE-081104-127]
Coordinates
chr19:2003685-2011169:-
Coord C1 exon
chr19:2010873-2011169
Coord A exon
chr19:2005675-2005797
Coord C2 exon
chr19:2003685-2003928
Length
123 bp
Sequences
Splice sites
3' ss Seq
TAATGTTTGTGTGTGTTCAGCAT
3' ss Score
6.02
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CCGCGATGAGCCACTGAGAGCCGCGAAAAAAACACAAATAATCGGCCGAGCATCATGACGGCGCCGCGCTAGAGCCCCGCATCCTCAGCATCAGCAGCAGCAGCATCATCATCTCAGGTGCGCAGGATGGAGTTCAAAGAGCTGGTGGACGCCGCCGAGAAATGGTGCACCGGGAACCCGTTCGACCTGATTTTCGCCGAGGATGTGGACGAGAGGCGGCTGGACTTCTACGCCGAGCCCGGGATCTCGTTCTACGTGCTCTGCCCGGACAATCTCACCGGAGGAACCGACAATTTT
Seq A exon
CATGTGTGGAGTGAGAGCGAGGACTGTCTGCCGTTCCTGCAGCTGGCGCAGGACTACATCTCCTCCTGCGGGAAGAAAACACTGCTGGAGGTGCTGGATAAAGTCTTCAGATCCTTCAGGCCT
Seq C2 exon
CTCCTGGGTCTTCCAGATATCGACGATGACACGTTCGATCAGTATCATGCAGATGTAGAGGAGGAACCAGAGCCAGACCACCAGCAGATGGGTGTGAGCCAGCAATAATGCCCAGCAGAGAGGCTCCGCGCTGGGCCTCAGTCTCTGCATCAAGCCCTGCTTCTCTAACCCCATAAACCTGCCTCTTCTTCCTTAACACACATACACACACACATATACACACACACACACTGGATCCCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074505-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.657
Domain overlap (PFAM):
C1:
PF151671=DUF4581=PU(40.8=93.0)
A:
PF151671=DUF4581=FE(30.8=100)
C2:
PF151671=DUF4581=PD(26.2=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGACCTGATTTTCGCCGAG
R:
AGCCTCTCTGCTGGGCATTAT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]