MmuEX6004445 @ mm10
Exon Skipping
Gene
ENSMUSG00000038065 | Mturn
Description
maturin, neural progenitor differentiation regulator homolog (Xenopus) [Source:MGI Symbol;Acc:MGI:1915485]
Coordinates
chr6:54681624-54703851:+
Coord C1 exon
chr6:54681624-54681931
Coord A exon
chr6:54689006-54689128
Coord C2 exon
chr6:54698980-54703851
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCTCATGGGCCACAGCAC
3' ss Score
4.62
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
GGGGCGGCCCCGGACTGGCGGGGCCCCGGGGTGCTTGGGTTCCTTTCAAGGCGGGCGGTGGGGGTGGGGGCGGGGCGGAGGCGGAGCGGGCGGTGTAAACAGACCCGGGAGCCGTGAGCCCCGGAGGAGGCGCGGGCGGCGCCGCCATGGACTTCCAGCAGCTGGCAGATGTCGCGGAGAAGTGGTGTTCCAGCACGCCCTTTGAGCTCATCGCCGCCGAGGAGACGGAGCGCAGGATGGACTTCTACGCCGACCCGGGCGTCTCCTTCTACGTACTGTGTCCGGACAACGGCTGCGGCGACAGCTTT
Seq A exon
CACGTGTGGAGCGAGAGCGAGGACTGCCTGCCCTTCTTGCAGCTGGCCCAAGATTACATCTCTTCCTGCGGCAAGAAGACCCTCCATGAAGTCTTGGAAAAAGTCTTCAAATCCTTCAGACCT
Seq C2 exon
TTGCTGGGGCTTCCAGACGCAGATGACGACGCGTTTGAAGAGTACAGTGCGGATGTGGAGGAGGAGGAGCCAGAGGCGGACCACCCGCAAATGGGGGTCAGTCAGCAGTAAACTCCTAGGTCACCTTGCAGAAGGGGAGTAAGCCCTGTGCACCCCATGGGGTCCGGTCCTCCGGACAGAGTTCGGTGCTCCTGGGGTAGCCCTTTTGCATTAGCACTTCAAAACAGGACATCCCGCTCCTGGCATCAGAATGAAAATGAAATACCCTTTAAATGACCACACAATATCTGTGACGAGGTTTGCTCGGCAGTGACCGGAATTGCCGCCCCACCTTGGTGGGGTCTCTATGGAGATGTCTTGGTAGCTTTTGCCCCTTTGAAGTTAGAGTCCGTCCGTGTTGTGGCTGCCTGTTCCCTCTCGAGTTTATGTTGGAGGATTAATGTTTCCTGACTGGAATGTAGAGAACTCTGAATGTATTAAGGATGTGTTCTGAGTCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038065-'0-4,'0-0,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.679
Domain overlap (PFAM):
C1:
PF151671=DUF4581=PU(39.1=92.6)
A:
PF151671=DUF4581=FE(31.5=100)
C2:
PF151671=DUF4581=PD(27.3=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAAGTGGTGTTCCAGC
R:
TTTACTGCTGACTGACCCCCA
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types