RnoEX0056599 @ rn6
Exon Skipping
Gene
ENSRNOG00000010205 | Mturn
Description
maturin, neural progenitor differentiation regulator homolog [Source:RGD Symbol;Acc:1549700]
Coordinates
chr4:84854386-84871757:+
Coord C1 exon
chr4:84854386-84854592
Coord A exon
chr4:84862505-84862627
Coord C2 exon
chr4:84870510-84871757
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTTGCCGCATGGGCTGCAGCAC
3' ss Score
3.33
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
GACCCGGGAGCCGTGAGCCCCGGAGGAGGCGCGGGCGGCGCCGCCATGGACTTCCAGCAGCTGGCAGATGTCGCGGAGAAGTGGTGTTCCAGCACGCCCTTTGAGCTCATCGCCGCCGAGGAGACGGAGCGCAGGATGGACTTCTACGCCGACCCGGGCGTCTCCTTCTACGTGCTGTGTCCGGACAACGGCTGCGGCGACAGCTTT
Seq A exon
CACGTGTGGAGCGAGAGCGAGGACTGCCTGCCCTTCTTGCAGCTGGCGCAGGACTACATCTCTTCCTGCGGCAAGAAAACGCTCCAGGAAGTCTTGGAAAAAGTCTTCAAGTCCTTCAGACCT
Seq C2 exon
TTGCTGGGGCTTCCAGACGCAGATGACGACGCATTTGAAGAGTACAGTGCAGATGTGGAGGAGGAGGAGCCAGAGGCGGACCACCCCCAAATGGGGGTCAGCCAGCAGTAAACTTCTAGGTCACCTTGCAGAAGGGGAGTAAGCCCTGTGCACCCCATGGGGTCCTGTGCTCCTGGGGTAGCCCTTTTGCATTAGCTCTTCAAAAACAGAACGTCTGGCTCTCGGCATCCAAATGAAAATGAAATACCTTTGAAATGACCACACAATATCTGTGATGAGATTTGCTCAGAAGTGACCAGAATTTCGGCCCCACTTTGGCGGGGGTCTCTATGGAGATGTCTTGGTAGCTTTTGCCTCTTTGAAGTTAGAGTCCATGTTGTGGCTGCCTGTTCCCTCTTGAGTTTATGTTAGAGAATTAATGTTTCCTAACTGGAATGTGGAGAACTCTGAATGTATTAAGGATGTGTTTTGAGTCCTCACAGGTGACCTTGCTGAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010205_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.694
Domain overlap (PFAM):
C1:
PF151671=DUF4581=PU(39.1=92.6)
A:
PF151671=DUF4581=FE(31.2=100)
C2:
PF151671=DUF4581=PD(27.3=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCCTTCTACGTGCTGTG
R:
AGCTAATGCAAAAGGGCTACCC
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]