GgaEX1037598 @ galGal4
Exon Skipping
Gene
ENSGALG00000027076 | MTURN
Description
maturin, neural progenitor differentiation regulator homolog (Xenopus) [Source:HGNC Symbol;Acc:HGNC:25457]
Coordinates
chr2:41948471-41960843:-
Coord C1 exon
chr2:41960381-41960843
Coord A exon
chr2:41956067-41956189
Coord C2 exon
chr2:41948471-41951073
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTGTGTTGCTTTCAGCAC
3' ss Score
10.02
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCACCGCGTCTGGTGCCCGCTTCAAACCGTAGCCACGCGCACCGCTTGGCTCGGCGCGCCTCGCGTCCTCCCGAAAGCCCCAAACCCCGGATCGGCGCCGGCAAGACAGAAGCAAACCCAAAGAACGGGCTCTGGGGGGCGGCGTGCTCCGAGGAGCCCCCTCCCTCGCAGCCCGCCGGGGGGCGGCCAGGCCCGGCCCACCGCCTCCCTCCCCCCCCCCTTCCCCGCGGGCCACCCCGGCACCTCAGCGGGGCGGGGGCGCGGCGGGGGCGGGCGCGGAGCGAGGAGCGCGGCGGCGGCGATGGCTTTCGAGGCGCTGGCGGAGGCTGCGGAGCGGTGGTGCGCCCGCACGCCCTTCCAGCTCATCGCCGCCGAGGAGACGGAGCGCCGCATGGACTTCTACGCCGAGCCCGGCGTCTCCTTCTACGTGCTGTGCCCGGAGGCCGCCTGCGGCGACAATTTC
Seq A exon
CACGTCTGGAGTGAGAGTGAGGACTGCTTACCTTTTCTGCAGCTCGCGCAGGATTACATCTCTTCTTGTGGGAAAAAGACACTCCATGAAATACTGGAAAAAGTCTTCAAATCCTTCAGACCT
Seq C2 exon
CTACTCGGGCTTCCAGATGTCGATGATGATGCGTTCGAAGAATATAATGCAGATATGGAAGAAGAGGAACCAGAAGCGGATCACCAACAAATGGGTGTCAGTCAGCAGTAATTTTCAGAGAAGCTGAAAAATTGGGAATCCTGTGGTACCAGGTGGGGTCAGATAGTCCCACGTTAGCCTGTTCGATTTAGCGCATCACACGGGGATATCTGGCTCCCAGGATACAAGTTTTATGAAATGTTTATTTAAAAAAAAAATAATAACAATCTGTGATGGGCTTTGCTAAGAAGTGACCTGAATTTTGCTCCTGCTTCAGTGGAGTTTCTATGGAGTTGTCTTGGTAGTATTCTGCCATTACCAGTCTAGAAGTAGTTTTGTTGCTGACTGTCTCCTTGATTTGTGTTTGAGAGTAACGTTCATGGACATGAATGTAGGATTGCCTTGAATGTAGGGACTGCAGGGCCGGTGTGCTGAGTACTCCTTGCATGTCACCTCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027076-'0-5,'0-2,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.694
Domain overlap (PFAM):
C1:
PF151671=DUF4581=PU(39.1=92.6)
A:
PF151671=DUF4581=FE(31.2=100)
C2:
PF151671=DUF4581=PD(27.3=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTTCTACGTGCTGTGC
R:
ATGCGCTAAATCGAACAGGCT
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]