BtaEX6027820 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71451943-71461186:+
Coord C1 exon
chr4:71451943-71452036
Coord A exon
chr4:71456341-71456591
Coord C2 exon
chr4:71461049-71461186
Length
251 bp
Sequences
Splice sites
3' ss Seq
CAGGCTGATTTCCCTTTCAGGGC
3' ss Score
9.47
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATTTCTGAAGATGATTCATATGTCAGTGACATAAGTGACAACTTTTCCTTAGACAATCTCAGTAATGATCTGGATAATGAGAGACAGACTTTGG
Seq A exon
GGCCAGTGATCGACAGTGGGGGGGAGGCCAGGTCCAAAAGAAGGACGTGTTTGCCCGCGCCGTGCCCAAAGTCCAGTAACATCAGCTTGTGGAACATCCTGAGAAACAACATCGGGAAGGACCTGTCTAAGGTGGCCATGCCGGTGGAGCTCAATGAGCCCCTCAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAACTCCTGGACAAGGCCGCCCAGCTGCCCAACGCCCTGGAAAGGATG
Seq C2 exon
GTGTATGTGGCAGCCTTTGCGGTGTCTGCATATGCATCTAGCTACTTTCGTGCCGGGAGTAAGCCTTTTAATCCGGTCCTTGGAGAAACATATGAATGTATTCGTGAGGACAAGGGCTTCCGGTTTTTTTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342-'16-26,'16-24,17-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0123713=Oxysterol_BP=PU(15.7=65.5)
C2:
PF0123713=Oxysterol_BP=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAAGATGATTCATATGTCAGTG
R:
AAAAACCGGAAGCCCTTGTCC
Band lengths:
220-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]