GgaEX1041410 @ galGal4
Exon Skipping
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31791294-31796240:-
Coord C1 exon
chr2:31796147-31796240
Coord A exon
chr2:31793536-31793786
Coord C2 exon
chr2:31791294-31791431
Length
251 bp
Sequences
Splice sites
3' ss Seq
TTCTGCATATTTATTTTTAGACT
3' ss Score
7.66
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
Exon sequences
Seq C1 exon
GTATCAGATGATGACTCATACGTAAGTGATATCAGTGATAATGTCTCCGAAGATAACCTAAGCAATGACATAGAGAATGAAAGACAAACTTTAG
Seq A exon
ACTGTATTTCTGAAAGTGGAATTGGATGCCATTCTAAACGGAGAACATGTTTACCAGCTCCATGTCCCAATACTAGTAACATCAGCCTATGGAATATCCTGAGAAACAACATAGGAAAGGATCTCTCTAAAGTGGCCATGCCTGTGGAATTGAATGAGCCACTTAACACCCTTCAGCGTCTCTGCGAGGAGCTGGAATACAGCGAGCTACTAGATAAAGCAGCTCATACACCTAACCCATTTGAACGGATG
Seq C2 exon
GTATATATAGCTGCATTTGCAGTATCTGCGTATGCATCCAGTTACTACCGAGCTGGAAGTAAGCCATTTAACCCCGTTCTTGGAGAAACCTATGAATGTATTCGTGAAGATAAGGGTTTCCAGTTCTTTGCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'23-27,'23-25,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGATGACTCATACGTAAGTGA
R:
TGTTCTGCAAAGAACTGGAAACC
Band lengths:
228-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]