HsaEX1046177 @ hg38
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24804315-24840783:-
Coord C1 exon
chr7:24840690-24840783
Coord A exon
chr7:24834486-24834736
Coord C2 exon
chr7:24804315-24804437
Length
251 bp
Sequences
Splice sites
3' ss Seq
CAGGCCTCTTTCCCTTTCAGGGC
3' ss Score
11.36
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATTTCTGATGATGACTCATATGTCAGTGACATAAGTGATAATCTTTCCTTAGATAATCTCAGTAATGATTTAGATAATGAGAGACAGACCTTGG
Seq A exon
GGCCTGTCCTTGATAGTGGTCGGGAAGCGAAGTCCCGGAGAAGAACGTGCCTGCCGGCGCCCTGCCCGAGCAGCAGTAACATCAGCCTGTGGAACATCCTGAGGAACAACATCGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTGGAGCTGAACGAGCCCCTGAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAGCTCCTGGACAAGGCCGCGCAGATTCCCAGCCCCCTGGAAAGGATG
Seq C2 exon
GTTTCTAGAGGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAACTGCAGAGAGAAAGGCGGCGGGTCTTAGAAGAAAATCATGTGGAGCACCAGCCTCGGTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882_MULTIEX1-12/21=10-21
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.211 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
C2:
PF0123713=Oxysterol_BP=FE(11.8=100)
Main Skipping Isoform:
ENST00000313367fB21720
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGACATAAGTGATAATCTTTCC
R:
GAAAAACCGAGGCTGGTGCTC
Band lengths:
193-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains