RnoEX6013591 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80052384-80060436:-
Coord C1 exon
chr4:80060343-80060436
Coord A exon
chr4:80055632-80055882
Coord C2 exon
chr4:80052384-80052521
Length
251 bp
Sequences
Splice sites
3' ss Seq
TCCGATTTCACTCCTTTCAGGTC
3' ss Score
10.51
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATCTCTGATGATGATTCATACGTCAGTGACATAAGTGATAATCTGTCCTTAGACAACCTCAGTAACGATTTAGACAATGAAAGACAGACCTTGG
Seq A exon
GTCCTGTTCTCGAAAGTAGTGGGGAAGCCAGGTCCAAAAGGCGGACCAGCCTGCCAGCGCCGGGACCCAACACCAGTAGCGTGAGTGTGTGGAGCATCCTGCGCAACAACATTGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTAGAGCTGAACGAGCCCCTGAACACACTGCAGCGGCTCTGCGAGGAGCTAGAATACAGCGAGCTTCTGGACAAGGCTGCGCACATGCCCAGTCCCCTGGAGAGGATG
Seq C2 exon
GTATACGTGGCAGCCTTCGCCATCTCTGCATATGCATCCAGCTACTTCCGGGCAGGCAGCAAGCCATTTAACCCGGTCCTTGGAGAAACGTACGAATGCATCCGACAGGACAAGGGTTTCCAGTTTTTTGCCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'22-31,'22-30,23-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.262 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGATGATGATTCATACGTCAGT
R:
AAAACTGGAAACCCTTGTCCTGT
Band lengths:
220-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]