DreEX0052763 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21559491-21576327:+
Coord C1 exon
chr16:21559491-21559584
Coord A exon
chr16:21562199-21562443
Coord C2 exon
chr16:21576190-21576327
Length
245 bp
Sequences
Splice sites
3' ss Seq
ATATGTTTTTTTTTTTTTAGGTT
3' ss Score
12.06
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCTTCAGAAGATGACTCATATATCAGTGACATCAGTGACAACGTGTCCATGGATAACTTCAGCAACGAGGCAGAGAATGAGAGACTCAATACAG
Seq A exon
GTTGTTTAGTGAATGGTGGTTTTCAAGAGCAACGGCGGTCCTGTCTTCCCTCCCCAAGTCCCAATACCAGCAACATAAGTCTGTGGAACATTCTAAAGAACAACATTGGGAAAGACTTGTCTAAAGTAGCCATGCCTGTTGAGCTAAACGAGCCACTCAACACACTGCAAAGACTGTGTGAGGAACTGGAGTACAGTGAATTGCTGGACAAGGCTGCACACACACAGGACCCATTTGAACGCATG
Seq C2 exon
GTTTATATTGCTACATTCGCCGTGTCTGGCTATGCTTCCAGTTATTACAGAGCAGGAGGAAAACCGTTTAATCCAGTGTTGGGTGAAACCTATGAGTGTGATCGTCCTGACAAAGGCTTTCGTTTTGTCGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'16-18,'16-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0123713=Oxysterol_BP=PU(15.9=67.1)
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGAAGATGACTCATATATCAG
R:
TCAGCGACAAAACGAAAGCCT
Band lengths:
228-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]