BtaEX6028835 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102113905-102134084:-
Coord C1 exon
chr4:102134019-102134084
Coord A exon
chr4:102117969-102118040
Coord C2 exon
chr4:102113905-102114021
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTTCTAATATTCTAGGGC
3' ss Score
9.93
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AACTTTGTGCGTCACCACTGGGTGCATAGGCGTCGGCAGGAAGGAAAGTGTAAGCAGTGCGGTAAG
Seq A exon
GGCTTTCAGCAAAAATTCTCCTTCCACAGTAAAGAGATTGTGGCTATCAGCTGTTCCTGGTGCAAACAGGCG
Seq C2 exon
TTTCACAATAAGGTGACCTGCTTCATGCTGCATCAGATTGAGGAACCCTGCTCCCTGGGGGCTCACGCTGCTGTTATTGTTCCGCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=77.3)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTGTGCGTCACCACTGG
R:
CTTAATGATCCAGGTGGGCGG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]