GgaEX6002529 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57682014-57687256:+
Coord C1 exon
chr1:57682014-57682079
Coord A exon
chr1:57686526-57686597
Coord C2 exon
chr1:57687140-57687256
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTGCTTATTGTAGGGC
3' ss Score
9.84
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AACTTTGTCCGACATCACTGGGTACACAGACGGAGGCAGGAGGGGAAATGTAAGCAGTGTGGAAAG
Seq A exon
GGCTTTCAGCAGAAATTCTCCTTCCATAGTAAAGAGATTGTGGCCATCAGTTGTTCCTGGTGCAAGCTGGCG
Seq C2 exon
TTTCATAACAAAGTCACCTGCTTCATGCTACATCACATTGAGGAGCCATGTTCTCTGGGGGCTCACGCGGCTGTCATTGTGCCTCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'11-7,'11-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=77.3)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCGACATCACTGGGTACA
R:
TCACCTTAATGATCCAGGTGGG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]