HsaEX0019450 @ hg38
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137608966-137645537:-
Coord C1 exon
chr7:137645472-137645537
Coord A exon
chr7:137623483-137623554
Coord C2 exon
chr7:137608966-137609064
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTTCTAATATCCCAGGGC
3' ss Score
7.63
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
AATTTTGTACGTCATCACTGGGTGCACAGGCGTCGGCAGGAGGGGAAATGTAAGCAGTGTGGTAAG
Seq A exon
GGCTTCCAGCAAAAGTTCTCCTTCCACAGTAAAGAGATTGTGGCTATCAGCTGTTCCTGGTGCAAGCAGGCG
Seq C2 exon
CAGGAAAACAAAGGTCGTCCTTTTGTGATAAAACCCATCTCTTCTCCTCTCATGAAACCCTTGCTTGTATTTGTGAATCCCAAGAGTGGAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX1-2/8=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=77.3)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTACGTCATCACTGGGTGC
R:
GGTTGCCTCCACTCTTGGGAT
Band lengths:
159-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development