GgaEX6002529 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59608466-59613708:+
Coord C1 exon
chr1:59608466-59608531
Coord A exon
chr1:59612978-59613049
Coord C2 exon
chr1:59613592-59613708
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTGCTTATTGTAGGGC
3' ss Score
9.84
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AACTTTGTCCGACATCACTGGGTACACAGACGGAGGCAGGAGGGGAAATGTAAGCAGTGTGGAAAG
Seq A exon
GGCTTTCAGCAGAAATTCTCCTTCCATAGTAAAGAGATTGTGGCCATCAGTTGTTCCTGGTGCAAGCTGGCG
Seq C2 exon
TTTCATAACAAAGTCACCTGCTTCATGCTACATCACATTGAGGAGCCATGTTCTCTGGGGGCTCACGCGGCTGTCATTGTGCCTCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=77.3)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCGACATCACTGGGTACA
R:
TCACCTTAATGATCCAGGTGGG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]