MmuEX0014432 @ mm9
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37013897-37037694:-
Coord C1 exon
chr6:37037629-37037694
Coord A exon
chr6:37017314-37017385
Coord C2 exon
chr6:37013897-37014013
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCCTACTGTCTCAGGGC
3' ss Score
8.82
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AACTTTGTGCGTCACCACTGGGTCCACAGGAGGCGGCAGGAGGGAAAATGTAAGCAGTGTGGTAAG
Seq A exon
GGCTTCCAGCAAAAGTTCTCCTTCCACAGTAAAGAGATCGTGGCCATCAGCTGTTCTTGGTGCAAGCAGGCG
Seq C2 exon
TTTCACAATAAAGTGACCTGCTTCATGCTGCATCATATTGAGGAACCCTGCTCCCTGGGGGCTCACGCCGCTGTTATTGTCCCGCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'8-10,'8-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=77.3)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTGTGCGTCACCACTGG
R:
CTTAATGATCCAGGTGGGCGG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: