BtaEX6028850 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101959942-101995913:-
Coord C1 exon
chr4:101995813-101995913
Coord A exon
chr4:101962286-101962365
Coord C2 exon
chr4:101959942-101959986
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCCTTTGCCCTCAGCCA
3' ss Score
8.9
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCCCCAGTCTGTTCCAGACCGTCTGAGGATCCGGGTGAACAAAATCAGTTTACAAGACTATGAAGGATTCCACTACGACAAAGAGAAACTCCGGGAAGCCT
Seq A exon
CCATCCCACTGGGCATTCTAGTTGTGCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGATCGCCTGCAGGAG
Seq C2 exon
GACCTGCAGTCAGTTTCTTCTGGCTCCCAGAGAGTTCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'29-29,'29-28,30-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGAGGATCCGGGTGAA
R:
CTGGTAATGAACTCTCTGGGAGC
Band lengths:
127-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]