DreEX6000524 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4617649-4619735:-
Coord C1 exon
chr4:4619635-4619735
Coord A exon
chr4:4617969-4618048
Coord C2 exon
chr4:4617649-4617693
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTTCAGCGA
3' ss Score
8.4
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CCCTCACGCCGTTCCAGAGCGCCTGCGTCTGCGTGTCAACCGCATCGGTCTGCAGGACTACGACAGCATGCAGTTCGATAAGGAACGTCTGCGCGACATCT
Seq A exon
CGACTGCTGTTGGCATCGTGGTGGTGAGAGGAGACTGTGACCTCGAAACCTGTCGACTCTACATTGATAGACTGCAGGAG
Seq C2 exon
GATTTGCATCAGGCGCCCTCTGCTGGCCACCGAGTGCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'25-31,'25-30,26-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGCCGTTCCAGAGC
R:
CTGATAGTGCACTCGGTGGC
Band lengths:
144-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]