MmuEX0014437 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36920354-36975247:-
Coord C1 exon
chr6:36975147-36975247
Coord A exon
chr6:36937321-36937400
Coord C2 exon
chr6:36920354-36920423
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCCTCCATCCTCAGCCA
3' ss Score
7.8
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGTGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGACAAACTCCGGGAAGCTT
Seq A exon
CCATCCCTCTGGGTATTCTAGTTGTTCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGTCTACAGGAG
Seq C2 exon
GACCAAGAAACCTCCTTCCCCAGGGCACTCTCAGCTCAGAGGCTGTCCCCACGGTGGTGCTTCCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGTCCCAGATCGCCT
R:
CATCTAGGAAGCACCACCGTG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types