GgaEX6002522 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57728372-57739510:+
Coord C1 exon
chr1:57728372-57728472
Coord A exon
chr1:57738098-57738177
Coord C2 exon
chr1:57739466-57739510
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTTCCTCTCCCAGCCA
3' ss Score
8.92
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCCTCATTCCATCCCTGATCGCCTGCGGATCAGAGTGAACCGGATTAATTTGCAAGAATATGAGGGGCTACATTATGACAAGGAAAAACTCCGTGAAGCTT
Seq A exon
CCATTCCCTTAGGAATTATAGTTGTACGAGGAGATTGTGACTTGGAGACCTGTCGTATGTATATTGACCGTCTACAAGAG
Seq C2 exon
GATCTACAGTCAGCAACTTCTACTACACAGAGAGTTCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'34-26,'34-25,35-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCCATCCCTGATCGCCT
R:
CTGGTAATGAACTCTCTGTGTAGT
Band lengths:
143-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]