GgaEX6002522 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59654823-59665961:+
Coord C1 exon
chr1:59654823-59654923
Coord A exon
chr1:59664549-59664628
Coord C2 exon
chr1:59665917-59665961
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTTCCTCTCCCAGCCA
3' ss Score
8.92
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCCTCATTCCATCCCTGATCGCCTGCGGATCAGAGTGAACCGGATTAATTTGCAAGAATATGAGGGGCTACATTATGACAAGGAAAAACTCCGTGAAGCTT
Seq A exon
CCATTCCCTTAGGAATTATAGTTGTACGAGGAGATTGTGACTTGGAGACCTGTCGTATGTATATTGACCGTCTACAAGAG
Seq C2 exon
GATCTACAGTCAGCAACTTCTACTACACAGAGAGTTCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCCATCCCTGATCGCCT
R:
CTGGTAATGAACTCTCTGTGTAGT
Band lengths:
143-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]