RnoEX6013173 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64472352-64509577:-
Coord C1 exon
chr4:64509477-64509577
Coord A exon
chr4:64474851-64474930
Coord C2 exon
chr4:64472352-64472396
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCCTCCATCCTCAGCCA
3' ss Score
7.8
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGCGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGAGAAACTCCGGGAAGCGT
Seq A exon
CCATCCCCCTGGGTATTCTAGTTGTTCGTGGAGACTGTGATTTGGAGACTTGCCGTATGTACATAGACCGCCTGCAGGAG
Seq C2 exon
GACTTGCAGTCAGTTTCTTCTGGGTCACAGAGAGTTCATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'36-38,'36-36,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.381
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGTCTGTCCCAGATC
R:
TGGTAATGAACTCTCTGTGACCCA
Band lengths:
145-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]