BtaEX6028893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004263 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr4:103227859-103231108:-
Coord C1 exon
chr4:103230896-103231108
Coord A exon
chr4:103229948-103230098
Coord C2 exon
chr4:103227859-103227998
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTCATATGTTCTTTTTGCAGGAA
3' ss Score
11.23
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTTAACACAGACAGAGTCTCACCGTCAGAGCCTCCTGCAAGAAGCAGCTGCCAACTGGCACTCCTGGGTCATCAAAGTGCAGAAGATGAAGGCCATCTATCATATCCTGAACCTGTGCAACATTGACATCACCCAGCAGTGTGTCATCGCTGAGATCTGGTTCCCAGTGGCTGACACCGTGCGCATCAGGAGGGCACTGGAGCAAGGCGTG
Seq A exon
GAACTAAGTGGCTCCTCCATGGTCCCCATCTTGACAGCAGTGCAGTCTAAAACAGCTCCTCCCACGTTTAACAGGACAAATAAATTCACAGCTGGCTTCCAGAATATTGTAGATGCATATGGCATAGGCAGTTACCGGGAGATGAACCCAG
Seq C2 exon
CTCCCTACACCATCATCACTTTCCCCTTCCTGTTCGCCGTGATGTTTGGAGACTGTGGTCATGGAACTGTGATGTTCCTGGCAGCCCTTTGGATGGTCCTTAATGAGAAACACTTGCTCGCTCAGAAGTCGACCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004263-'14-14,'14-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(11.4=100)
A:
PF0149614=V_ATPase_I=FE(6.2=100)
C2:
PF0149614=V_ATPase_I=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGACAGAGTCTCACCGT
R:
AAACATCACGGCGAACAGGAA
Band lengths:
254-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]