MmuEX6003776 @ mm10
Exon Skipping
Gene
ENSMUSG00000038600 | Atp6v0a4
Description
ATPase, H+ transporting, lysosomal V0 subunit A4 [Source:MGI Symbol;Acc:MGI:2153480]
Coordinates
chr6:38074122-38078958:-
Coord C1 exon
chr6:38078746-38078958
Coord A exon
chr6:38076686-38076836
Coord C2 exon
chr6:38074122-38074261
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCACTTTGTTCTTTCTGCAGGAA
3' ss Score
11.67
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCATTACCCAAACAGAGTCTCACCGACAGCGCCTGCTGCAGGAAGCAGCTGCCAACTGGCACTCCTGGGTCATCAAAGTACAGAAGATGAAGGCCGTCTACCATGTGCTGAACATGTGCAACATTGACGTCACCCAGCAGTGCATCATTGCCGAGATCTGGTTCCCAGTAGCAGACACTAGACACATTAAGAAGGCCCTGGAGCAAGGCATG
Seq A exon
GAACTCAGTGGCTCCTCCATGATTCCCATCATGACAGAAGTGGAAACTAAAACAGACCCTCCCACCTTCAACAGGACGAATAAATTTACAGCTGGCTTCCAGAACATTGTTGATGCGTATGGTGTAGGTAGCTACCGAGAGATAAACCCAG
Seq C2 exon
CTCCCTACACTATCATCACCTTCCCCTTCCTGTTCGCTGTGATGTTTGGAGACTGTGGTCATGGAATGGTGATGCTGATGGCAGCCTTGTGGATGGTCCTAAATGAGAGGCACTTGCTGGCTCAGAAGAGCACCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038600-'31-24,'31-21,32-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(13.9=100)
A:
PF0149614=V_ATPase_I=FE(6.3=100)
C2:
PF0149614=V_ATPase_I=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAACAGAGTCTCACCGA
R:
CATCACAGCGAACAGGAAGGG
Band lengths:
251-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types