GgaEX6002428 @ galGal3
Exon Skipping
Gene
ENSGALG00000012810 | ATP6V0A4
Description
NA
Coordinates
chr1:58394708-58396428:+
Coord C1 exon
chr1:58394708-58394920
Coord A exon
chr1:58395375-58395525
Coord C2 exon
chr1:58396289-58396428
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCACTGGGTTTGCAGGAG
3' ss Score
6.55
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGATAACCCAAACTGAGTCCCACCGCCAGCGGCTGCTGCACGAGGCAGCAGCCAACATGTGGTCCTGGGAGATCAAGGTAAAGAAAATCAAGGCCATCTACCACATCCTGAATTGCTGTAACATTGACGTCACCCAGCAGTGTGTCATTGCAGAGATCTGGTTCCCAGTAGCTGATGCTGGCAGGATAAAAAGAGCTCTCCATCAGGGAATG
Seq A exon
GAGAGAAGTGGCTCTACCATCACCCCTATCCTGACCACCATACACACTAGGATGGCACCACCCACCTTCAACAGGACTAACAAGTTCACAGCTGGATTTCAGAACATCGTGGATGCATACGGTGTAGGCAACTACAGGGAGATGAACCCAG
Seq C2 exon
CTCCTTACACTATCATTACCTTCCCCTTCCTTTTTGCGGTGATGTTTGGGGACTGTGGGCACGGTGCTGTCATGCTGGGCTTTGCGCTCTGGATGGTCATTAACGAGGAGAGCCTTCTGGCCCAGAAGAGCACCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012810-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.7=100)
A:
PF0149614=V_ATPase_I=FE(6.2=100)
C2:
PF0149614=V_ATPase_I=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCCTGGGAGATCAAGG
R:
ATGACCATCCAGAGCGCAAAG
Band lengths:
255-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]