RnoEX6013205 @ rn6
Exon Skipping
Gene
ENSRNOG00000013428 | Atp6v0a4
Description
ATPase H+ transporting V0 subunit a4 [Source:RGD Symbol;Acc:1305055]
Coordinates
chr4:65761402-65766952:-
Coord C1 exon
chr4:65766740-65766952
Coord A exon
chr4:65763912-65764062
Coord C2 exon
chr4:65761402-65761541
Length
151 bp
Sequences
Splice sites
3' ss Seq
CATGTCCTTTCTTTCTGCAGGAA
3' ss Score
13.19
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCATTACCCAAACAGAGTCTCACCGACAGCGCCTACTGCAGGAAGCAGCTTCCAACTGGCACTCGTGGGTCATCAAAGTACAGAAGATGAAGGCCGTCTACCACGTGCTGAACATGTGCAACATCGACGTCACCCAGCAGTGCATCATTGCTGAGATCTGGTTCCCTGTAGCAGACACTAGACACATTAAGAAGGCCCTGGAGCAAGGCATG
Seq A exon
GAACTCAGTGGCTCCTCCATGGTCCCCATCATGACAGAAGTGGAAACTAAAACAGACCCTCCCACCTTCAATAGGACCAATAAATTTACAGCTGGCTTCCAGAACATTGTCGATGCATATGGTGTAGGTAGCTACCGAGAGATAAACCCAG
Seq C2 exon
CCCCCTATACTATCATCACCTTCCCCTTCCTGTTCGCTGTGATGTTTGGAGACTGTGGTCACGGGATGGTGATGCTGATGGCCGCCCTGTGGATGGTCCTAAATGAGAGACACTTGCTGGCTCAGAAGAGCACCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013428-'15-20,'15-19,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.1=100)
A:
PF0149614=V_ATPase_I=FE(6.5=100)
C2:
PF0149614=V_ATPase_I=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAACAGAGTCTCACCGA
R:
CATCACAGCGAACAGGAAGGG
Band lengths:
251-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]