HsaEX6010771 @ hg38
Exon Skipping
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase H+ transporting V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr7:138747425-138752837:-
Coord C1 exon
chr7:138752625-138752837
Coord A exon
chr7:138749167-138749317
Coord C2 exon
chr7:138747425-138747564
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTTTTTTTTCCAGGAA
3' ss Score
11.68
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCATAACACAAACAGAGTCTCACCGCCAGCGCCTGCTGCAGGAAGCCGCTGCCAACTGGCACTCCTGGCTCATCAAGGTGCAGAAGATGAAAGCTGTCTACCACATCCTGAACATGTGCAACATCGACGTCACCCAGCAGTGTGTCATCGCCGAGATCTGGTTCCCGGTGGCAGATGCCACACGTATCAAGAGGGCACTGGAGCAAGGCATG
Seq A exon
GAACTAAGTGGCTCCTCCATGGCCCCCATCATGACCACAGTGCAATCTAAAACAGCCCCTCCCACATTTAACAGGACCAATAAATTCACAGCTGGCTTCCAGAATATTGTTGATGCCTATGGTGTCGGCAGCTACCGGGAGATAAACCCAG
Seq C2 exon
CCCCCTACACCATCATCACTTTCCCCTTCCTGTTCGCTGTGATGTTTGGAGACTGTGGTCATGGAACCGTGATGCTCCTGGCTGCACTTTGGATGATTCTGAATGAGAGACGCTTGCTCTCCCAGAAGACAGACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929-'22-22,'22-20,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(11.4=100)
A:
PF0149614=V_ATPase_I=FE(6.2=100)
C2:
PF0149614=V_ATPase_I=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCTGGCTCATCAAGGTG
R:
ATCATCCAAAGTGCAGCCAGG
Band lengths:
250-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains