BtaEX6029856 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:7044879-7050477:+
Coord C1 exon
chr6:7044879-7044966
Coord A exon
chr6:7048587-7048687
Coord C2 exon
chr6:7050400-7050477
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTCTTTTTTATAAAGGGC
3' ss Score
6.33
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAGTGAACACCCACTTGCTCAGCTCTACTGCCATTCAATCATGGAGCATCATCATTTTGATCAGTGCCTGATGATCCTTAATAGTCCT
Seq A exon
GGCAATCAGATTCTCAGTGGCCTCTCCATTGAAGAGTATAAGACCACCCTGAAGATCATCAAGCAAGCTATTTTAGCCACAGACCTAGCACTGTACATAAA
Seq C2 exon
GAGACGAGGAGAATTTTTTGAACTTATAATGAAAAATCAATTCAATTTGGAAGATCCTCATCAAAAGGAGTTGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.1=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAACACCCACTTGCTCAG
R:
AACAACTCCTTTTGATGAGGATCT
Band lengths:
162-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]