RnoEX6011386 @ rn6
Exon Skipping
Gene
ENSRNOG00000014443 | Pde5a
Description
phosphodiesterase 5A [Source:RGD Symbol;Acc:620995]
Coordinates
chr2:227012847-227019254:+
Coord C1 exon
chr2:227012847-227012934
Coord A exon
chr2:227017122-227017222
Coord C2 exon
chr2:227019177-227019254
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTTTTATATAAAGGGC
3' ss Score
5.94
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGCGAGCACCCCCTGGCCCAGCTGTACTGCCACTCCACCATGGAGCACCACCACTTCGACCAGTGCTTGATGGTTCTAAACAGCCCA
Seq A exon
GGCAACCAGATCCTCAGTGGCCTCTCCATTGAAGAATATAAGACCACATTGAAAATAATCAAGCAAGCAATTTTAGCCACTGACCTAGCACTGTACATTAA
Seq C2 exon
GAGACGAGGAGAATTTTTTGAACTTATAAGAAAAAATGAATTCAGTTTTGAAGATCCTCTTCAAAAGGAGTTGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014443-'20-20,'20-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.1=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGCCCAGCTGTACT
R:
AGAAACAACTCCTTTTGAAGAGGA
Band lengths:
155-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]