GgaEX6035041 @ galGal4
Exon Skipping
Gene
ENSGALG00000011982 | PDE5A
Description
phosphodiesterase 5A, cGMP-specific [Source:HGNC Symbol;Acc:HGNC:8784]
Coordinates
chr4:54113072-54114590:+
Coord C1 exon
chr4:54113072-54113159
Coord A exon
chr4:54114326-54114426
Coord C2 exon
chr4:54114513-54114590
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTGTTTTTTGTAAAGGGA
3' ss Score
5.42
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAGTGAACATCCACTGGCTCAACTGTATTGCCACTCCATCATGGAGCATCACCATTTTGATCAATGCCTGATGATCCTGAATAGTCCA
Seq A exon
GGAAACCAGATTCTCAGCAGCCTTTCAATTGAAGAGTACAAGGCAACACTGAAAATGATAAAACAAGCCATCCTTGCAACAGACCTAGCACTATACATAAA
Seq C2 exon
GAGGAGAGGAGAATTTTTTGAACTTCTAAGGAAAAAGCAGTTTAATTGGGAAGATCCTATGCAGAAGGAGCTATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982-'31-28,'31-27,32-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.1=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAACATCCACTGGCTCA
R:
ATAGCTCCTTCTGCATAGGATCT
Band lengths:
162-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]