DreEX6007797 @ danRer10
Exon Skipping
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57303638-57308407:+
Coord C1 exon
chr7:57303638-57303725
Coord A exon
chr7:57308099-57308199
Coord C2 exon
chr7:57308330-57308407
Length
101 bp
Sequences
Splice sites
3' ss Seq
AGAATATATTTCTCTCTCAGGGT
3' ss Score
7.48
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
AAGTGACCATCCACTGGCCCAACTGTACTGCCACTCCACAATGGAGCATCACCACTTTGACCAGTGTCTCATGATTCTCAACAGCCCT
Seq A exon
GGTAATCAGATTCTGAGTGGTCTTTCCCTGGATGAGTACAAGGCGACACTGAAGATGATTGAGAAGGCTATTTTGGCCACTGACCTGGCTGTCTACATGAA
Seq C2 exon
AAAAAGAACAGAATTCTTCGAGCTAGCTAAGAACAGTCAGTTTGAATGGGAAGATGATTGCCACAGGGATCTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.1=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCACTGGCCCAACTGTA
R:
AGATCCCTGTGGCAATCATCT
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]