BtaEX6029968 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13466062-13475806:-
Coord C1 exon
chr6:13475744-13475806
Coord A exon
chr6:13474720-13474818
Coord C2 exon
chr6:13466062-13466134
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCGCTCGCTCTTCAGAAT
3' ss Score
9.8
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GGCCACACGCACATCATCAATGTTTTGCTGCAGCACGGGGCCAAGCCCAACGCTACCACCGCG
Seq A exon
AATGGCAACACTGCCTTGGCGATTGCTAAGCGTCTGGGCTACATCTCGGTGGTGGACACCCTGAAGGTTGTAACGGAGGAGGTCACCACCACCACCACG
Seq C2 exon
ACTATCACTGAAAAACACAAGCTAAATGTTCCTGAGACCATGACTGAGGTTCTTGATGTTTCTGATGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-'52-55,'52-54,55-55=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.121 C2=0.766
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(30.3=100)
A:
PF127962=Ank_2=PD(42.4=84.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACGCACATCATCAATG
R:
CCTCTTCATCAGAAACATCAAGAACC
Band lengths:
135-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]