MmuEX6073964 @ mm10
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126988144-126998975:-
Coord C1 exon
chr3:126998877-126998975
Coord A exon
chr3:126997853-126997951
Coord C2 exon
chr3:126988144-126988216
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCTCTCTCTTCAGAAT
3' ss Score
13.54
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AATGGCTACACACCTTTGCACCAAGCTGCCCAGCAGGGCCACACACACATCATTAATGTCCTGCTCCAGCACGGGGCCAAGCCTAATGCTACTACTGCG
Seq A exon
AATGGTAACACGGCCCTGGCGATTGCTAAGCGGCTGGGCTACATCTCCGTGGTTGACACCCTGAAGGTTGTGACTGAAGAGGTCACCACCACTACCACG
Seq C2 exon
ACTATCACGGAAAAACATAAGCTAAATGTTCCTGAGACAATGACGGAGGTCCTTGATGTTTCTGATGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'64-74,'64-73,68-74
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.121 C2=0.881
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTACACACCTTTGCACC
R:
TTCATCAGAAACATCAAGGACCTCC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types