DreEX0013081 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57657500-57659106:-
Coord C1 exon
chr7:57659008-57659106
Coord A exon
chr7:57657671-57657769
Coord C2 exon
chr7:57657500-57657572
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCCATGTTTGCTTTGTGTAGAAT
3' ss Score
6.08
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AATGGTTATACACCTTTGCACCAGGCTGCACAACAAGGCAACACACACATCATTAATGTCTTACTCCAGTATGGGGCCAAACCCAATGCCATCACTGTG
Seq A exon
AATGGAAACACTGCTCTTGCCATTGCACGTCGCCTTGGATACATTTCTGTGGTAGACACACTAAGAGTGGTCACAGAAGAAATTGTCACAACAACAACA
Seq C2 exon
ACAGTGACAGAGAAACACAAACTAAATGTGCCAGAAACCATGACAGAAGTCCTTGATGTGTCTGATGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'35-32,'35-31,36-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=0.000 C2=0.964
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(31.9=87.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACACCTTTGCACCAGGCT
R:
CCTCTTCATCAGACACATCAAGGA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]