MmuEX6073964 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126691062-126701893:-
Coord C1 exon
chr3:126701795-126701893
Coord A exon
chr3:126700771-126700869
Coord C2 exon
chr3:126691062-126691134
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCTCTCTCTTCAGAAT
3' ss Score
13.54
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AATGGCTACACACCTTTGCACCAAGCTGCCCAGCAGGGCCACACACACATCATTAATGTCCTGCTCCAGCACGGGGCCAAGCCTAATGCTACTACTGCG
Seq A exon
AATGGTAACACGGCCCTGGCGATTGCTAAGCGGCTGGGCTACATCTCCGTGGTTGACACCCTGAAGGTTGTGACTGAAGAGGTCACCACCACTACCACG
Seq C2 exon
ACTATCACGGAAAAACATAAGCTAAATGTTCCTGAGACAATGACGGAGGTCCTTGATGTTTCTGATGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'32-31,'32-30,34-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.121 C2=0.892
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF127962=Ank_2=PD(41.8=84.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTACACACCTTTGCACC
R:
TTCATCAGAAACATCAAGGACCTCC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: