GgaEX0018071 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58360585-58369176:-
Coord C1 exon
chr4:58369078-58369176
Coord A exon
chr4:58366013-58366111
Coord C2 exon
chr4:58360585-58360657
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTTTTTCTCTTCAGAAT
3' ss Score
11.79
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AATGGGTACACTCCTCTCCACCAAGCTGCTCAACAAGGTCACACTCACATCATTAATGTCCTTCTCCAACATGGAGCTAAGCCCAATGCCATCACCACC
Seq A exon
AATGGTAACACTGCCTTAGCTATTGCTAGGCGTCTGGGATATATCTCAGTGGTCGATACGCTGAAGGTTGTAACGGAGGAGATTACTACCACCACAACT
Seq C2 exon
ACTGTAACAGAGAAGCACAAGCTAAATGTACCCGAAACAATGACTGAGGTCCTGGATGTTTCAGATGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'27-33,'27-32,28-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.124 C2=0.984
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(31.9=87.9)
A:
PF127962=Ank_2=PD(42.2=81.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACACTCCTCTCCACCAA
R:
TCTTCATCTGAAACATCCAGGACC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]