HsaEX6085886 @ hg19
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:493]
Coordinates
chr4:114213572-114223995:+
Coord C1 exon
chr4:114213572-114213670
Coord A exon
chr4:114214596-114214694
Coord C2 exon
chr4:114223923-114223995
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCACTCTCTCTTCAGAAT
3' ss Score
11.67
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AACGGCTACACGCCTTTGCACCAGGCCGCTCAGCAGGGTCACACGCACATCATCAACGTCCTGCTCCAGCATGGGGCCAAGCCCAACGCCACCACTGCG
Seq A exon
AATGGCAACACTGCCTTGGCGATTGCTAAGCGTCTGGGCTACATCTCCGTGGTCGACACCCTGAAGGTTGTGACTGAGGAGGTCACCACCACCACCACA
Seq C2 exon
ACTATTACAGAAAAACACAAACTAAATGTACCTGAGACGATGACTGAGGTTCTTGATGTTTCTGATGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-'35-40,'35-39,37-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.126 C2=0.914
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(32.6=90.9)
A:
PF127962=Ank_2=PD(41.8=84.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACGCCTTTGCACCAGG
R:
CCTCTTCATCAGAAACATCAAGAACC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)