RnoEX6011465 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231292901-231302555:-
Coord C1 exon
chr2:231302457-231302555
Coord A exon
chr2:231301197-231301295
Coord C2 exon
chr2:231292901-231292973
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTTCAGAAT
3' ss Score
13.81
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AATGGCTATACACCTTTGCACCAAGCTGCCCAGCAGGGACACACACACATCATTAATGTGCTGCTCCAGCATGGGGCCAAACCTAATGCTACCACTGCG
Seq A exon
AATGGTAACACAGCCCTGGCGATTGCTAAGCGGCTGGGCTACATCTCCGTGGTTGACACCCTGAAGGTTGTGACTGAAGAGGTCACCACCACTACCACG
Seq C2 exon
ACTATCACGGAAAAACATAAGCTAAATGTTCCTGAGACAATGACGGAAGTTCTGGATGTTTCTGATGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'54-45,'54-44,57-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=0.121 C2=0.863
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATACACCTTTGCACCA
R:
CCTCTTCATCAGAAACATCCAGA
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]