BtaEX6029976 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13430493-13447928:-
Coord C1 exon
chr6:13447825-13447928
Coord A exon
chr6:13433477-13433701
Coord C2 exon
chr6:13430493-13430647
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCTTCCATTTTAACTTTTAGTTT
3' ss Score
9.23
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGACAACTCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTAAGCTGGGGCACTGAGAACTTGGACAACGTGGCTCTTTCTTCCAGCCCTATTCATTCAGG
Seq A exon
TTTCCTGGTTAGTTTTATGGTGGATGCCCGAGGTGGTGCTATGCGAGGATGCAGACACAACGGGCTCCGCATCATTATTCCGCCCCGGAAATGTACCGCCCCAACACGAGTCACCTGCCGACTGGTCAAACGCCATAGACTGGCGACAATGCCTCCAATGGTGGAAGGAGAGGGCCTGGCCAGTCGCCTGATTGAAGTTGGACCTTCTGGTGCTCAGTTCCTTGG
Seq C2 exon
GCCTGTGATCGTGGAGATCCCTCATTTCGCTGCCCTGCGAGGAAAAGAGAGGGAACTGGTGGTCCTGCGCAGTGAGAACGGGGACAGCTGGAAAGAGCATTACTGTGAATACACGGAGGAGGAGCTGAATGAAATCCTGAACGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-'69-75,'69-72,72-75=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.002 C2=0.024
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.9)
A:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAACTCTAGCCAAGGAGG
R:
CTTCATCCATGCCGTTCAGGA
Band lengths:
259-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]