GgaEX6035119 @ galGal4
Exon Skipping
Gene
ENSGALG00000012044 | chAnk2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NG08]
Coordinates
chr4:56374441-56388301:-
Coord C1 exon
chr4:56388198-56388301
Coord A exon
chr4:56376234-56376458
Coord C2 exon
chr4:56374441-56374539
Length
225 bp
Sequences
Splice sites
3' ss Seq
AATTTTTCCTGATTTTTCAGCTT
3' ss Score
8.51
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTAACTACTCTGGCCAAAGAAGCAGAAAGGAATTCATATCGCTTAAGCTGGGGGCCTGAAAACTTGGACAATGTGGCTCTTTCTTCCAGCCCTATTCACTCAGG
Seq A exon
CTTCCTAGTTAGTTTCATGGTGGATGCTCGTGGGGGTGCCATGAGAGGCTGCAGACATAACGGACTGCGGATTATTATTCCTCCACGGAAATGCACTGCTCCAACACGAGTGACTTGCCGCTTGGTGAAACGTCACAGACTGGCCACCATGCCTCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGTCTGATCGAAGTGGGACCATCTGGGGCCCAGTTTCTTGG
Seq C2 exon
TAAACTTCATCTGCCTACGGCTCCTCCCCCACTTAATGAGGGAGAAAGCTTGGTCAGCCGAATCCTTCAGCTGGGGCCTCCTGGGACCAAATTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'47-54,'47-52,51-54=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.013 C2=0.092
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.2=2.9)
A:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(53.2=97.1)
Main Skipping Isoform:
ENSGALT00000019661fB14113
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGCCAAAGAAGCAGAA
R:
CAAGGAATTTGGTCCCAGGAGG
Band lengths:
196-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]