DreEX6007829 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57635948-57650296:-
Coord C1 exon
chr7:57650205-57650296
Coord A exon
chr7:57646539-57646763
Coord C2 exon
chr7:57635948-57636102
Length
225 bp
Sequences
Splice sites
3' ss Seq
ATATCTCTTTCTCACTGCAGTTT
3' ss Score
8.5
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGTCTTCTCTTGGAAGAGAAAATGAAAAGGACTCATGGGAAACTGAAAACTTGGACAACATAGCACTTTCCTCAAGTCCTGCTCATTCTGG
Seq A exon
TTTCTTAGTCAGCTTCATGGTGGATGCTCGAGGAGGTGCCATGCGAGGATGCCGCCACAATGGTCTGCGGCTGATCATTCCACCACGGAAGTGCAGCGCCCCTACTAGAGTCACCTGTAGACTGGTCAAAAGGCACCGACTGGCAACAATGCCTCCAATGGTAGAAGGTGACGGTCTAGCCAGCAGGCTGATTGAGGTCGGACCTTCTGGAGCTCAGTTCCTCGG
Seq C2 exon
GCCGGTGATTGTGGAGATCCCGCACTTTGCAGCTCTGAGAGGAAAAGAGAGGGAGCTGGTGATCTTACGTAGTGAAACCGGAGAGAGCTGGAAAGAGCATCACTGCGAGTACACAGAAGAAGAGCTCAACCAGGTCCTCAACGGCATGGATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'46-43,'46-40,48-43=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.053 C2=0.247
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.2=3.2)
A:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(37.3=53.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGAAAATGAAAAGGACTCA
R:
TCTCATCCATGCCGTTGAGGA
Band lengths:
236-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]