GgaEX6035119 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58328276-58343477:-
Coord C1 exon
chr4:58343374-58343477
Coord A exon
chr4:58331409-58331633
Coord C2 exon
chr4:58328276-58328430
Length
225 bp
Sequences
Splice sites
3' ss Seq
AATTTTTCCTGATTTTTCAGCTT
3' ss Score
8.51
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTAACTACTCTGGCCAAAGAAGCAGAAAGGAATTCATATCGCTTAAGCTGGGGGCCTGAAAACTTGGACAATGTGGCTCTTTCTTCCAGCCCTATTCACTCAGG
Seq A exon
CTTCCTAGTTAGTTTCATGGTGGATGCTCGTGGGGGTGCCATGAGAGGCTGCAGACATAACGGACTGCGGATTATTATTCCTCCACGGAAATGCACTGCTCCAACACGAGTGACTTGCCGCTTGGTGAAACGTCACAGACTGGCCACCATGCCTCCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGTCTGATCGAAGTGGGACCATCTGGGGCCCAGTTTCTTGG
Seq C2 exon
GCCTGTGATTGTGGAGATTCCCCATTTTGCTGCTCTGCGTGGGAAAGAGAGAGAACTGGTGATCCTGCGCAGTGAGAACGGGGACAGCTGGAAGGAACATTTCTGCGAATACACTGAGGATGAACTAAATGAAATCTTGAATGGGATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'36-47,'36-44,40-47=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.001 C2=0.021
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.9)
A:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGCCAAAGAAGCAGAA
R:
TTCATCCATCCCATTCAAGATTTCA
Band lengths:
252-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]